Package com.pixelmed.dicom
package com.pixelmed.dicom
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ClassDescriptionA concrete class specializing
Attribute
for Age String (AS) attributes.A concrete class specializingAttribute
for Application Entity (AE) attributes.A class of static methods for copying data between arrays of different types, expanding arrays, and comparing them, and removing padding from strings.A class that extendsFilterOutputStream
by creating a separate thread to actually perform the output operations, and returning immediately from write calls, but blocking on closing.TheAttribute
class is an abstract class that contains the core functionality for storing, accessing and maintaining values of a DICOM Attribute.TheAttributeFactory
class is a factory class of static methods for creating concrete instances of the abstract classAttribute
based on their value representation.TheAttributeList
class maintains a list of individual DICOM attributes.An interface to supply the criteria for prematurely terminating the reading of a DICOM file.The abstractAttributeListFunctionalGroupsTableModel
class extends aAttributeListTableModel
to abstract the contents of a list of attributes containing shared and per-frame functional groups for multi-frame objects as a table in order to provide support for aAttributeListTableBrowser
.The abstractAttributeListFunctionalGroupsTableModelAllFrames
class extends aAttributeListFunctionalGroupsTableModel
to abstract the contents of a list of attributes containing shared and per-frame functional groups for multi-frame objects as a table with a row for each frame in order to provide support for aAttributeListTableBrowser
.The abstractAttributeListFunctionalGroupsTableModelOneFrame
class extends aAttributeListFunctionalGroupsTableModel
to abstract the contents of a list of attributes containing shared and per-frame functional groups for multi-frame objects as a table with a single row for a single frame in order to provide support for aAttributeListTableBrowser
.TheAttributeListTableBrowser
class implements a Swing graphical user interface to browse the contents of anAttributeListTableModel
.TheAttributeListTableModel
class extends aAbstractTableModel
to abstract the contents of a list of attributes as a single row table in order to provide support for aAttributeListTableBrowser
.An individual DICOM data element (attribute) tag that includes a group and element (each a 16 bit unsigned binary).A concrete class specializingAttribute
for Attribute Tag (AT) attributes.TheAttributeTree
class implements aTreeModel
to abstract the contents of a list of attributes as a tree in order to provide support for aAttributeTreeBrowser
.TheAttributeTreeBrowser
class implements a Swing graphical user interface to browse the contents of anAttributeTree
.Instances of theAttributeTreeRecord
class represent nodes in a tree of theAttributeTree
class, which in turn is used by theAttributeTreeBrowser
class.A class that extendsFilterInputStream
by adding the concept of little and big endian binary value encoding, and supplies functions for reading various sized integer and floating point words.A class that extendsFilterOutputStream
by adding the concept of little and big endian binary value encoding, and supplies functions for writing various sized integer and floating point words.An abstract class of static methods to support removing identifying attributes and adding Clinical Trials Patient, Study and Series Modules attributes.A class to encapsulate the attributes contained within a Sequence Item that represents a Coded Sequence item.A concrete class specializingAttribute
for Code String (CS) attributes.A class to encapsulate the information related to Coding Scheme Identification encoded in composite instances within CodingSchemeIdentificationSequence.A class to encapsulate the attributes of an Item of CodingSchemeIdentificationSequence.A class to encapsulate patient and study information to be used for coercion of identifiers in DICOM instances.A class to encapsulate color palettes, including serialization and deserialization to and from standard DICOM color palette IODs.Standard DICOM Hot Iron color palette.Standard DICOM Hot Metal Blue color palette.Standard DICOM PET color palette.Standard DICOM PET 20 Step color palette.A class for representing the attributes of general modules that describe the patient, study, series, instance and related "context" of the payload of a composite DICOM instance.A class to select which entities are copied or propagated or removed or not during operations on CompositeInstanceContext.TheCompressedFrameDecoder
class implements decompression of selected frames in various supported Transfer Syntaxes once already extracted from DICOM encapsulated images.TheCompressedFrameEncoder
class implements compression of specified frames in various supported Transfer Syntaxes, which can then be incorporated in DICOM encapsulated images.An abstract class for representing a node in an internal representation of a structured reporting tree (an instance ofStructuredReport
).A class with methods for constructing aContentItem
of the appropriate class from a list of attributes.An abstract class for representing a node in an internal representation of a structured reporting tree (an instance ofStructuredReport
).An abstract class for representing a node in an internal representation of a structured reporting tree (an instance ofStructuredReport
).A concrete class specializingAttribute
for Date (DT) attributes.A concrete class specializingAttribute
for Date Time (DT) attributes.A concrete class specializingAttribute
for Decimal String (DS) attributes.A class of static methods to provide descriptions of images, including image orientation relative to the patient from the mathematical position and orientation attributes, and including other descriptive attributes such as from dicom directory records and images using multi-frame functional groups.TheDicomDictionary
class is a complete standard dictionary of DICOM attributes and associated information.TheDicomDictionaryBase
class is an abstract class for creating and accessing a dictionary of DICOM attributes and associated information.Various static methods helpful for handling DICOM files.A class that extendsBinaryInputStream
by adding the concept of transfer syntaxes, for a (possible) meta information header and a data set.A class that extendsBinaryOutputStream
by adding the concept of transfer syntaxes, for a (possible) meta information header and a data set.A class to copy DICOM attributes from anm input stream to an output stream, converting the encoding of the attributes between transfer syntaxes if necessary.A set of display shutter parameters constructed from the attributes of the DICOM Display Shutter Module.A class that extendsInputStream
by adding a mechanism for unencapsulating an undefined length DICOM attribute, such as is used for compressed Pixel Data.A class for encapsulating compressed grayscale or RGB consumer image format input files (that JIIO can recognize) into DICOM images of a specified SOP Class, or single or multi frame DICOM Secondary Capture images.A class to abstract the contents of a file meta information header as used for a DICOM PS 3.10 file, with additional static methods to add to and extract from an existing list of attributes.A concrete class specializingAttribute
for Float Double (FD) attributes.A concrete class specializingAttribute
for Float Single (FL) attributes.A class to describe a set of frames sharing common characteristics suitable for display or analysis as an entity.A class contain useful methods for manipulating Functional Group Sequences.A class to select which functional groups are copied or propagated or removed or not during operations on functional groups.A class to extract and describe the spatial geometry of a single cross-sectional image slice, given a list of DICOM attributes.A class to extract and describe the spatial geometry of an entire volume of contiguous cross-sectional image slices, given a list of DICOM attributes.A class to represent the study, series and instance identifiers necessary to retrieve a specific single image or frame in a multi-frame image using the hierarchical model.A class to represent the study, series and instance identifiers necessary to retrieve a specific instance using the hierarchical model.A class to represent a non-hierarchical image reference.A class for converting RGB consumer image format input files (anything JIIO can recognize) into DICOM images of a specified SOP Class, or single or multi frame DICOM Secondary Capture images.A class to provide enumerated constants for the entities of the DICOM Information Model.A concrete class specializingAttribute
for Integer String (IS) attributes.A class to encode a representation of a DICOM object in a JSON form, and to convert it back again.A class to encode a representation of a DICOM Structured Report object in a JSON form, suitable for analysis as human-readable text.A concrete class specializingAttribute
for Long String (LO) attributes.A concrete class specializingAttribute
for Long Text (LT) attributes.A class to categorize DICOM images as having been lossy compressed or not.This class is designed to support the importation of DICOM files from interchange media (such as CDs and DVDs).A class that implementsRunnable
so that it can be invoked byEventQueue.invokeAndWait()
.A transformation constructed from a DICOM attribute list that extracts those attributes that define the Modality LUT transformation, specifically the window center and width attributes.This class provides a main method that recursively searches the supplied paths for DICOM files and moves them into a folder hierarchy based on their attributes.A class to create a set of instances, which when given unenhanced ("classic") images creates one or more enhanced multiframe image instances from them where possible, otherwise leaves them alone but includes them in the set.A class that extendsOutputStream
to discard output.An abstract class specializingAttribute
for Other (OB or OW) attributes whose values are not memory resident.A concrete class specializingAttribute
for Other Byte (OB) attributes.A concrete class specializingAttribute
for Other Byte (OB) attributes whose compressed frames are not memory resident.A concrete class specializingAttribute
for Other Byte (OB) attributes whose values are not memory resident but rather are stored in multiple compressed files on disk.A concrete class specializingAttribute
for Other Byte (OB) attributes whose values are memory or file resident compressed pixel data frames.A concrete class specializingAttribute
for Other Byte (OB) attributes whose values are not memory resident but rather are stored in multiple files on disk.A concrete class specializingAttribute
for Other Byte (OB) attributes whose values are an array of bytes per frame rather than a single contiguous array containing all frames.A concrete class specializingAttribute
for Other Byte (OB) attributes whose values are not memory resident.A concrete class specializingAttribute
for Other Double (OD) attributes.A concrete class specializingAttribute
for Other Float (OF) attributes.A concrete class specializingAttribute
for Other Float (OF) attributes whose values are not memory resident but rather are stored in multiple files on disk.A concrete class specializingAttribute
for Other Long (OL) attributes.A concrete class specializingAttribute
for Other Very Long (OV) attributes.A concrete class specializingAttribute
for Other Word (OW) attributes.A concrete class specializingAttribute
for Other Word (OW) attributes whose values are not memory resident but rather are stored in multiple files on disk.A concrete class specializingAttribute
for Other Word (OW) attributes whose values are an array of shorts per frame rather than a single contiguous array containing all frames.A concrete class specializingAttribute
for Other Word (OW) attributes whose values are not memory resident.A set of bitmap overlays constructed from a DICOM attribute list.A class for converting PDF files into a single or multi frame DICOM Secondary Capture image with one frame per page.A class to provide support for the Person Identification Macro.A concrete class specializingAttribute
for Person Name (PN) attributes.An class to extract and describe pixel spacing related information.This class includes standard and private mechanisms for handling float or double Pixel Data.A transformation constructed from a DICOM attribute list that extracts those attributes which describe how stored pixel values are translated into real world values (e.g., Hounsfield Units, cm/s).A concrete class specializingAttribute
for Sequence (SQ) attributes.A class to provide support for the contents of an individual item of a DICOM Sequence (SQ) attribute, each of which consists of an entire dataset (list of attributes).A class to describe a set of DICOM files and their features such as SOP Class, Instance and Transfer Syntax UIDs.A class to describe a set of frame sets, each of which shares common characteristics suitable for display or analysis as an entity.A concrete class specializingAttribute
for Short String (SH) attributes.A concrete class specializingAttribute
for Short Text (ST) attributes.A concrete class specializingAttribute
for Signed Long (SL) attributes.A concrete class specializingAttribute
for Signed Short (SS) attributes.A concrete class specializingAttribute
for Signed Very Long (SV) attributes.A single bitmap overlay planeThe abstract base class of classes that implement individual DICOM SOP Classes or groups of SOP Classes that behave similarly (for example the composite instance Storage SOP Classes).A class of static methods to provide a means of describing SOP Classes with abbreviations and hman-readable descriptions.A class to represent a non-hierarchical instance reference.A class to encapsulate information describing references in a structured report to images, with or without spatial coordinates.A class to encapsulate the functionality defined by the DICOM Specific Character Set attribute, including the ability to parse the string values of the attribute and then apply the appropriate character conversions from byte array values into Java's internal Unicode representation contained inString
.A class to extract and describe the spatial geometry of an MR spectroscopy localization volume, given a list of DICOM attributes.TheStandaloneAttributeTreeBrowser
class implements a Swing graphical user interface to browse the contents of anAttributeTree
using anAttributeTreeBrowser
.This is an abstract class to support creating path names for how to organize the folders and files for stored composite instances based on their SOP Instance UID.Store files in a hierarchy of folders using successive numeric components of the SOP Instance UID as the folder name and the SOP Instance UID as the filename within the most deeply nested folder.Store files in a hierarchy of folders using successive decimal digits of the hashcode of the SOP Instance UID as the folder name and the SOP Instance UID as the filename within the most deeply nested folder.Store files in a single folder, using the SOP Instance UID as the filename.An abstract class specializingAttribute
for the family of string attributes.An abstract class specializingAttribute
for the family of string attributes that support different specific character sets.TheStructuredReport
class implements aTreeModel
to abstract the contents of a list of attributes representing a DICOM Structured Report as a tree in order to provide support for aStructuredReportBrowser
.TheStructuredReportTreeBrowser
class implements a Swing graphical user interface to browse the contents of aStructuredReport
.A transformation constructed from a DICOM attribute list that extracts those attributes which describe how stored pixel values are translated into PET SUV values.TheTagFromName
class contains a selected list of constant values for frequently usedAttributeTag
s.An abstract class specializingAttribute
for the family of text attributes.TheTiledFramesIndex
class ...A concrete class specializingAttribute
for Time (TM) attributes.A class to represent the characteristics of a DICOM Transfer Syntax, which may be instantiated from a UID or from basic characteristics, as well as static UID strings for known Transfer Syntaxes, and static methods for extracting the characteristics of known Transfer Syntaxes.A class to lookup the DICOM Transfer Syntax UID from a string name.A class for generating new UIDs, deterministically or not, including potentially reproducible Study, Series and SOP Instance UIDs.A concrete class specializingAttribute
for Unique Identifier (UI) attributes.A concrete class specializingAttribute
for Unviversal Resource (UR) attributes.A concrete class specializingAttribute
for Unknown (UN) attributes.A concrete class specializingAttribute
for Unlimited Characters (UC) attributes.A concrete class specializingAttribute
for Unlimited Text (UT) attributes.A concrete class specializingAttribute
for Unsigned Long (UL) attributes.A concrete class specializingAttribute
for Unsigned Short (US) attributes.A concrete class specializingAttribute
for Unsigned Very Long (UV) attributes.Utilities to support the concept of the DICOM Value Representation (VR), including two byte arrays for each VR, and tester methods that determine whether or not a particular two byte array is a particular type of VR.Various pre-defined constants for identifying this software.A class of static methods for handling veterinary (animal) data.A transformation constructed from a DICOM attribute list that extracts those attributes that define the VOI LUT transformation, specifically the window center and width attributes.A class to encode a representation of a DICOM object in an XML form, suitable for analysis as human-readable text, or for feeding into an XSLT-based validator, and to convert them back again.A class to encode a representation of a DICOM Structured Report object in an XML form, suitable for analysis as human-readable text, or for feeding into an XSLT-based validator.